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Restarting / refreshing a snowstorm installation

Added by Anibal Jodorcovsky on Nov 26, 2021

I'd like to refresh / start a new with my snowstorm installation. How do I do that?

Status: In discussion 926 View 1 Comment Comments enabled In the category: Snowstorm

Comment Last contribution, Nov 30, 2021. All contributions

Kai Kewley

The simplest way to delete all the data in your installation is to start Snowstorm using this command line flag "--delete-indices". For example: java -Xms2g -Xmx4g -jar snowstorm.jar --delete-indices From there you can load the SNOMED CT RF2 data again. Don't forget to remove this flag when you restart next time!

Best practices for Snowstorm and branches

Added by Rory Davidson on Nov 3, 2019

(originally posted by eroenjum - copied from 96808101 ) We recently implemented a Proof of Concept for patient information as open data in Norway - with SNOMED CT as the metadata core. In this work we did an installation of Snowstorm, and used this as API against the front end GUI. The project was very successful. We will now reset Snowstorm and build the terminology server in a more sustainable way. But we have not found good documentation on best practices on how to install different

Status: In discussion 2730 View 3 Comment Comments enabled In the category: Snowstorm

Comment Last contribution, Nov 6, 2019. All contributions

Kai Kewley

Hi eroenjum, if you have extensions which are dependant on each other you can import them in a branch tree structure. For example if you have a local extension SNOMEDCT-NO-NORD which depends on the Norway extension this could live at MAIN/SNOMEDCT-NO/SNOMEDCT-NO-NORD. This way running a query on the Nord extension branch also queries the Norway extension. We have used the same technique to host the Argentinian extension in the public browser using branch MAIN/SNOMEDCT-ES/SNOMEDCT-AR. The ICPC-2 content is not so straight forward.. if this content is common to all Norway content it could be loaded into the SNOMEDCT-NO code system along with the Norway extension? The downside to this would be that the ICPC-2 content could not be versioned independently of the Norway extension within Snowstorm but this may be an acceptable inconvenience. Let us know if you try any of these ideas and how you get on. Kind regards, Kai

[NL] Hoe vind ik voor een concept de patiëntvriendelijke term in SNOMED? En hoe de term voor de zorgverlener?

Added by Pim Volkert on Aug 23, 2019

Het antwoord voor zorgverleners: De SNOMED-browser geeft u de mogelijkheid om voor iedere medische term een patiëntvriendelijke variant terug te vinden. Deze patiëntvriendelijke term herkent u in de browser aan het groene pion onder de volledige benaming van de medische term. De medische term die door zorgverleners gebruikt wordt, herkent u aan de blauwe aesculaap. Het antwoord voor informatieanalisten: SNOMED gebruikt zogeheten language reference sets oftewel taalrefentiesets om aan te g

Status: New 813 View 0 Comment Comments enabled In the category: Netherlands

[NL] Hoe importeer ik een mapping uit SNOMED?

Added by Pim Volkert on Aug 23, 2019

SNOMED maakt onderscheid tussen verschillende soorten mappings: equivalente, complexe en uitgebreide mappings. Het verschil tussen deze soorten mappings, waar u ze kunt vinden en hoe u deze mappings kunt importeren kunt u lezen via deze link https://www.nictiz.nl/standaardisatie/terminologiecentrum/referentielijsten/inbouwen-snomed-referentieset. Question on how to import mappings.

Status: New 571 View 0 Comment Comments enabled In the category: Netherlands

Snowstorm via Docker

Added by Sander Mertens on Aug 23, 2019

During the workshops for developers, I will show my docker-compose script for the Snowstorm terminology server. Using this script you can quickly and easily spin up a scalable Snowstorm server, which is easy to remove or spin down after use. More information can be found on https://github.com/Nictiz/Nictiz-Snowstorm/ https://github.com/Nictiz/Nictiz-Snowstorm/ We are happy to answer any questions regarding this repository in this thread.

Status: New 1630 View 0 Comment Comments enabled In the category: Netherlands

Python Snowstorm API client

Added by Sander Mertens on Aug 23, 2019

As we receive many questions on the implementation of the Snowstorm REST API, I have made a simple Python client and published this on Github. https://github.com/mertenssander/python_snowstorm_client https://github.com/mertenssander/python_snowstorm_client The documentation is sparse, but Python code is fairly easily readable and this code can give developers handholds for understanding the Snomed/Snowstorm API logic. I am happy to answer any questions here or on Github, and of course su

Status: In discussion 3157 View 2 Comment Comments enabled In the category: Netherlands

Comment Last contribution, Aug 26, 2019. All contributions

Sander Mertens

Hi rdavidson, thank you! I think this would make a nice addition to the 5-minutes, but I am still actively working on documentation and developing the client for further optimization. Due to this, a hyperlink to my repository would perhaps be more fitting for now. Other than this, I would be honored to have my code included in the 5-minutes.

[NL] Nictiz Developers workshop - 15 Oktober 2019

Added by Sander Mertens on Aug 23, 2019

Na een succesvolle workshop 'Snomed en Snowstorm voor developers', is het tijd ons voor te bereiden op de volgende workshop. Deze zal plaatsvinden op 15 oktober 2019. Meer informatie en een aanmeldformulier zijn te vinden op dit Aanmeldformulier https://www.nictiz.nl/agenda/snomed%e2%80%afct-voor-software-ontwikkelaars-2/. Wij zijn erg benieuwd naar veelvoorkomende vragen rondom het implementeren van Snomed en/of het gebruik van de Snowstorm terminologieserver, en horen graag van jullie

Status: New 721 View 0 Comment Comments enabled In the category: Netherlands

Welcome to the Netherlands specific topics

Added by Pim Volkert on Aug 20, 2019

Discussion on the the implementation of SNOMED in the Netherlands. Feel free to post questions and answers. You might already find some answers to your questions on the Nictiz site. https://www.nictiz.nl/standaardisatie/terminologiecentrum/snomed-ct/snomed-ct-release-center/veelgestelde-vragen-over-snomed-ct/#Technisch

Status: New 813 View 0 Comment Comments disabled In the category: Netherlands

Welcome to General Development

Added by Rory Davidson on Aug 19, 2019

This discussion cateogry is for you to ask any general questions about software development with SNOMED CT that are not specific to any piece of software

Status: New 821 View 0 Comment Comments disabled In the category: General development

Welcome to the Snowstorm discussion category

Added by Rory Davidson on Aug 19, 2019

This discussion category is to ask questions about using, deploying and developing with SNOMED International Snowstorm terminology server that are more general. Any bugs or issues should be posted on the GitHub repo issue page https://github.com/IHTSDO/snowstorm/issues

Status: New 1065 View 0 Comment Comments disabled In the category: Snowstorm

	Topic	Status	Author	Like	View	Replies	Creation date	Last Reply	Contributors	Category
Question	Restarting / refreshing a snowstorm installation	In discussion	Anibal Jodorcovsky	0	View 926	Comment 1	$discPage.getCreationDate().getTime() Nov 26, 2021 04:11	Nov 30, 2021 16:47	1	Snowstorm
Question	Best practices for Snowstorm and branches	In discussion	Rory Davidson	1	View 2730	Comment 3	$discPage.getCreationDate().getTime() Nov 3, 2019 22:58	Nov 6, 2019 13:48	3	Snowstorm
Question	[NL] Hoe vind ik voor een concept de patiëntvriendelijke term in SNOMED? En hoe de term voor de zorgverlener?	New	Pim Volkert	0	View 813	Comment 0	$discPage.getCreationDate().getTime() Aug 23, 2019 11:29	0 -	0 -	Netherlands
Discussion	[NL] Hoe importeer ik een mapping uit SNOMED?	New	Pim Volkert	0	View 571	Comment 0	$discPage.getCreationDate().getTime() Aug 23, 2019 11:26	0 -	0 -	Netherlands
Discussion	Snowstorm via Docker	New	Sander Mertens	2	View 1630	Comment 0	$discPage.getCreationDate().getTime() Aug 23, 2019 11:07	0 -	0 -	Netherlands
Discussion	Python Snowstorm API client	In discussion	Sander Mertens	2	View 3157	Comment 2	$discPage.getCreationDate().getTime() Aug 23, 2019 11:05	Aug 26, 2019 06:41	2	Netherlands
Discussion	[NL] Nictiz Developers workshop - 15 Oktober 2019	New	Sander Mertens	0	View 721	Comment 0	$discPage.getCreationDate().getTime() Aug 23, 2019 10:56	0 -	0 -	Netherlands
Discussion	Welcome to the Netherlands specific topics	New	Pim Volkert	1	View 813	Comment 0	$discPage.getCreationDate().getTime() Aug 20, 2019 09:02	0 -	0 -	Netherlands
Discussion	Welcome to General Development	New	Rory Davidson	0	View 821	Comment 0	$discPage.getCreationDate().getTime() Aug 19, 2019 09:41	0 -	0 -	General development
Discussion	Welcome to the Snowstorm discussion category	New	Rory Davidson	3	View 1065	Comment 0	$discPage.getCreationDate().getTime() Aug 19, 2019 08:25	0 -	0 -	Snowstorm

Discussion summary

Questions 3 Discussions 7 Replies 6 Contributors 4

Snowstorm 3

Netherlands 6

General development 1

Contributors (4)

Eirik Hafver Roenjum

Number of accepted comment 0

Number of comment 1
Kai Kewley

Number of accepted comment 0

Number of comment 2
Rory Davidson

Number of accepted comment 0

Number of comment 2
Sander Mertens

Number of accepted comment 0

Number of comment 1

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Kai Kewley

Kai Kewley

Sander Mertens

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