Search



You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 3 Next »

The first step in delivering comprehensive care is to undertake a clinical assessment. Clinical assessment data which can be recorded using SNOMED CT includes:

These data elements are described below, with example SNOMED CT subsets for each. For each subset member, we also indicate whether this concept is included in SNOMED International's Global Patient Set (GPS), which is available to be used internationally under the Creative Commons Attribution 4.0 International License.

2.3.1 Symptoms 

Symptoms represent physical or mental features which are regarded as an indication of a condition or disease, particularly those features that are apparent to the patientThis SNOMED CT subset of COVID-19 symptoms has been developed based on a review of relevant Pubmed literature. 1, research performed by Kings College London 2 , and a review of COVID-19 data collection forms (e.g. 3). 

CV19-ASS-Symptoms
Concept idFully Specified Nameen-US Preferred TermEffective Time
In GPS
21522001Abdominal pain (finding)Abdominal pain20050131Yes
29857009Chest pain (finding)Chest pain20040731Yes
43724002Chill (finding)Chill20020131Yes
49727002Cough (finding)Cough20020131Yes
62315008Diarrhea (finding)Diarrhea20020131Yes
267036007Dyspnea (finding)Dyspnea20020131

Yes

271807003Eruption of skin (disorder)Eruption of skin20020731

Yes

84229001Fatigue (finding)Fatigue20020131Yes
386661006Fever (finding)Fever20030131Yes
25064002Headache (finding)Headache20100131Yes
66857006Hemoptysis (finding)Hemoptysis20020131Yes
79890006 |Loss of appetite (finding)Loss of appetite20020131Yes
44169009Loss of sense of smell (finding)Loss of sense of smell20200131Yes
36955009Loss of taste (finding)Loss of taste20020131-
367391008Malaise (finding)Malaise20020131Yes
68962001Muscle pain (finding)Muscle pain20020131Yes
422587007Nausea (finding)Nausea20070131Yes
162397003Pain in throat (finding)Pain in throat20020131Yes
422400008Vomiting (disorder)Vomiting20180731Yes

2.3.2 Severity 

Severity represents the quality of the condition - for example,  24484000 | Severe (severity modifier) (qualifier value)| . Severity may be recorded for each symptom, or as a general statement of their disease state. 

CV19-ASS-Severity
Concept idFully Specified Nameen-US Preferred TermEffective Time In GPS
255604002Mild (qualifier value)Mild20020131Yes
6736007Moderate (severity modifier) (qualifier value)Moderate20020131Yes
24484000Severe (severity modifier) (qualifier value)Severe20020131Yes
442452003Life threatening severity (qualifier value)Life threatening severity20090731Yes

2.3.3 Clinical Measurements 

Clinical measurements involve the performance of physiological tests to diagnose and refine therapeutic management of an already established disease. The following clinical measurements can be used in the assessment of a COVID-19 patient.

CV19-ASS-ClinicalMeasurements
Concept idFully Specified Nameen-US Preferred TermEffective TimeIn GPS
386725007Body temperature (observable entity)Body temperature20170131-
75367002Blood pressure (observable entity)Blood pressure20170131Yes
364075005Heart rate (observable entity)Heart rate20170131-
431314004Peripheral oxygen saturation (observable entity)Oxygen saturation (SpO2)20080731-
86290005Respiratory rate (observable entity)Respiratory rate20170131Yes

2.3.4 Clinical Findings 

Clinical findings are the result of measuring, questioning, evaluating, or otherwise observing a patient or a specimen from a patient in healthcare. The following clinical findings are positive or negative indications that signs are present in a COVID-19 patient.

CV19-ASS-ClinicalFindings
Concept idFully Specified Nameen-US Preferred TermEffective TimeIn GPS
288848001Able to breathe (finding)Able to breathe20080731-
371632003Coma (disorder)Coma20020731Yes
193894004Conjunctival hyperemia (finding)Conjunctival hyperemia20100131-
267036007Dyspnea (finding)Dyspnea20020131Yes
126664009Exudative pharyngitis (disorder)Exudative pharyngitis20020131-
442646005Imaging of lung abnormal (finding)Imaging of lung abnormal20090731Yes
274710003Lung field abnormal (finding)Lung field abnormal20020131Yes
91175000Seizure (finding)Seizure20020131Yes
271823003Tachypnea (finding)Tachypnea20020131Yes
288849009Unable to breathe (finding)Unable to breathe20080731-

Please refer to 2.3.1 Extension Concepts - Clinical Assessment for a list of known extension concepts.

2.3.5 Diagnosis 

A diagnosis is the identification of the nature of the illness, based on an examination of the symptoms, observations, measurements, test results and other investigation results. The following subset includes a range of diagnoses directly related to COVID-19.

CV19-ASS-Diagnosis
Concept idFully Specified Nameen-US Preferred TermEffective Time
In GPS
840539006Disease caused by severe acute respiratory syndrome coronavirus 2 (disorder)COVID-1920200131Yes
840544004Suspected disease caused by severe acute respiratory coronavirus 2 (situation)Suspected COVID-1920200131Yes


Please refer to 2.3.1 Extension Concepts - Clinical Assessment for a list of known extension concepts.

2.3.6 Clinical History 

The clinical history concepts are used to record information gained by a physician by asking specific questions, either of the patient or of other people who know the person and can give suitable information, with the aim of obtaining information useful in formulating a diagnosis and providing medical care to the patient.

CV19-ASS-ClinicalHistory
Concept idFully Specified Nameen-US Preferred TermEffective TimeIn GPS

292508471000119105

History of disease caused by severe acute respiratory syndrome coronavirus 2 (situation)

History of SARS-CoV-2

20200731Yes

2.3.7 Secondary Conditions and Complications 

A secondary condition is any health condition that is "dependent or consequent on another disease or condition" 4. A complication is "a disorder caused by another disorder, procedure or event, which is not a natural progression or expected outcome of its cause 5.

The following subset includes SNOMED CT clinical findings that may be recorded as either secondary conditions or complications. Clinical judgement is required to determine whether these conditions are expected outcomes or unexpected complications of COVID-19.

CV19-ASS-SecondaryConditionsAndComplications
Concept idFully Specified Nameen-US Preferred TermEffective Time
In GPS
373895009Acute respiratory distress (finding)Acute respiratory distress20020731-
67782005 Acute respiratory distress syndrome (disorder)Acute respiratory distress syndrome20020131Yes
56265001Heart disease (disorder)Heart disease20020131Yes
419099009
Dead (finding)
Dead20060131Yes
25374005Gastroenteritis (disorder)Gastroenteritis20020131Yes
90708001Kidney disease (disorder)Kidney disease20020731Yes
302846007Rhabdomyoma (disorder)Rhabdomyoma20040731-
308906005Secondary bacterial pneumonia (disorder)Secondary bacterial pneumonia20160131-
75570004Viral pneumonia (disorder)Viral pneumonia20130731Yes

138389411000119105

Acute bronchitis caused by severe acute respiratory syndrome coronavirus 2 (disorder)

Acute bronchitis caused by SARS-CoV-220200731Yes
674814021000119106

Acute respiratory distress syndrome caused by severe acute respiratory syndrome coronavirus 2 (disorder)

Acute respiratory distress syndrome caused by SARS-CoV-2

20200731Yes
119731000146105Cardiomyopathy due to infection by severe acute respiratory syndrome coronavirus 2 (disorder)Cardiomyopathy due to infection by severe acute respiratory syndrome coronavirus 220200731-
119741000146102Conjunctivitis due to infection by severe acute respiratory syndrome coronavirus 2 (disorder)Conjunctivitis due to infection by severe acute respiratory syndrome coronavirus 220200731-
1240561000000108Encephalopathy due to disease caused by severe acute respiratory syndrome virus 2 (disorder)Encephalopathy due to disease caused by severe acute respiratory syndrome virus 220200731-
1240541000000107Infection of upper respiratory tract caused by severe acute respiratory syndrome coronavirus 2 (disorder)Upper respiratory tract infection caused by SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2)20200731-

880529761000119102

Lower respiratory infection caused by severe acute respiratory syndrome coronavirus 2 (disorder)

Lower respiratory infection caused by SARS-CoV-2

20200731Yes
866151004Lymphocytopenia associated with severe acute respiratory syndrome coronavirus 2 (disorder)Lymphocytopenia associated with severe acute respiratory syndrome coronavirus 220200731Yes
1240531000000103Myocarditis due to disease caused by severe acute respiratory syndrome virus 2 (disorder)Myocarditis due to disease caused by severe acute respiratory syndrome virus 220200731-
1240521000000100Otitis media due to disease caused by severe acute respiratory syndrome virus 2 (disorder)Otitis media due to disease caused by severe acute respiratory syndrome virus 220200731-

882784691000119100

Pneumonia caused by severe acute respiratory syndrome coronavirus 2 (disorder)

Pneumonia caused by SARS-CoV-2

20200731Yes

866152006

Thrombocytopenia associated with severe acute respiratory syndrome coronavirus 2 (disorder)Thrombocytopenia associated with severe acute respiratory syndrome coronavirus 220200731Yes


Please refer to 2.3.1 Extension Concepts - Clinical Assessment for a list of known extension concepts.

2.3.8 Known Risk Factors 

Know risk factors are used to record the known patient conditions which may increase the risk of the patient being especially vulnerable to the COVID-19 virus. The following clinical findings are potential risk factors of COVID-19 3 6.

CV19-ASS-KnownRiskFactors
Concept idFully Specified Nameen-US Preferred TermEffective Time
In GPS
195967001Asthma (disorder)Bronchial hypersensitivity20040731Yes

78648007

At risk for infection (finding)

At risk for infection

20020131Yes
27624003Chronic disease (disorder)Chronic disease20020131-
413834006Chronic disease of immune function (disorder)Chronic disease of immune function20050131-
17097001Chronic disease of respiratory system (disorder)Chronic respiratory system disease20020131-
128238001Chronic heart disease (disorder)Chronic disorder of heart20020131-
709044004Chronic kidney disease (disorder)Chronic kidney disease20150731Yes
328383001Chronic liver disease (disorder)Chronic liver disease20090731Yes

128283000

Chronic nervous system disorder (disorder)

Chronic nervous system disorder

20020131-
13645005Chronic obstructive lung disease (disorder)Chronic obstructive lung disease20020131Yes
13213009Congenital heart disease (disorder)CHD - Congenital heart disease20030731Yes
73211009Diabetes mellitus (disorder)Diabetes mellitus20020131Yes
8517006Ex-smoker (finding)Ex-smoker20020131Yes
38341003Hypertensive disorder, systemic arterial (disorder)Hypertensive disorder20020131Yes

234532001

Immunodeficiency disorder (disorder)

Immunodeficiency disorder

20020131Yes
370388006Patient immunocompromised (finding)Patient immunocompromised20020731Yes
363346000Malignant neoplastic disease (disorder)Malignant neoplastic disease20020131Yes
414915002Obese (finding)Obese20050131Yes
77386006Pregnant (finding)Pregnant20020131Yes
6383007Premature labor (finding)Premature labor20020131Yes
77176002Smoker (finding)Smoker20020131Yes

2.3.9 Comorbidities 

Comorbidities are additional medical conditions of concern. The following SNOMED CT subset can be used to record comorbidities.

CV19-ASS-Comorbidities

Intensional Definition:

Intensional Definition:

64572001 |Disease (disorder)|

2.3.10 Exposure Event 

An exposure event is when an individual comes into close contact with an infected person's contaminated droplets, carried in the air or on contaminated hands, surfaces or other objects. The subset below includes SNOMED CT events for recording exposure to COVID-19.

CV19-ASS-ExposureEvent
Concept idFully Specified Nameen-US Preferred TermEffective Time
In GPS
840546002Exposure to severe acute respiratory syndrome coronavirus 2 (event)Exposure to SARS-CoV-220200131Yes

Please refer to 2.3.1 Extension Concepts - Clinical Assessment for a list of known extension concepts.

2.3.11 Covid-19 and Viral Co-Infections 

The following organism should be used when recording the organism causing COVID-19 infections.

CV19-ASS-Organism
Concept idFully Specified Nameen-US Preferred TermEffective Time
In GPS
840533007Severe acute respiratory syndrome coronavirus 2 (organism)SARS-CoV-220200131Yes

The following organisms can be used to record the cause of related viral co-infections.

CV19-ASS-ViralCoInfections



Footnotes
Original subset contributed by the Swedish National Release Center, based on https://pubmed.ncbi.nlm.nih.gov/?term=covid+19&filter=pubt.review.
COVID Symptom Tracker Research Updates - https://covid.joinzoe.com/blog
SNOMED CT Editorial Guide, SNOMED International, http://snomed.org/eg


Feedback
  • No labels