Search



Page tree

You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 4 Next »

Composite subtype hierarchy views enable selection of supertypes and subtypes of specified concepts accompanied by human-readable terms for each the selected concepts. The hierarchy views include  supertype parentssubtype childrensupertype ancestors and subtype descendants of specified concepts. More specialized views are also included to list the  proximal primitive parents of a specified concepts and to list concepts that share a specified proximal primitive parent. All these views use include a human-readable term (either the fully specified name or the preferred synonym) for each concept listed in the output

1

Supertype Parent and Subtype Child Views

For each snapshot view the SNOMED CT example database includes two views that select the supertype parents of a specified concept and two views that select the subtype children of a specified concept. These views select the id and either the fully specified name or preferred synonym each parent or child concept. The characteristics of each of these views are shown in  Table 4.8.3-1 and a general template for the SQL definitions of these views is shown in  Template 4.8.3-1. To create each of the views named in the table, the placeholders for {termtype} need to be replaced with values in the Specific Settings column of the table. 

Example 4.8.3-1 demonstrates the use of these views to select the id and preferred term for a specified concept and all of its supertype parents and subtype children.

Table 4.8.3-1: Composite Views of Supertype Parents and Subtype Children

Name

2

Description Specific Settings
{termtype}
snap_rel_parent_fsn Selects the id and fully specified nameof each supertype parent of a concept specified by conceptId. fsn
snap_rel_parent_pref Selects the id and preferred synonymof each supertype parent of a concept specified by conceptId. pref

snap_rel_child_fsn

Selects the id and fully specified name of each subtype child of a concept specified by conceptId. fsn

snap_rel_child_pref

Selects the id and preferred synonym of each subtype child of a concept specified by conceptId.

pref

Template 4.8.3-1: SQL Templates for Composite Views of Supertype Parents and Subtype Children

-- Supertype Parent View
CREATE VIEW `snap_rel_parent_{termtype}` AS
    SELECT `r`.`targetId` AS `id`, `d`.`term` AS `term`, `r`.`sourceId` AS `conceptId`
	FROM `snap_relationship` `r` JOIN `snap_{termtype}` `d` ON `r`.`targetId` = `d`.`conceptId`
    WHERE `r`.`active` = 1  AND `r`.`typeId` = 116680003;
-- Subtype Child View: Differences are `sourceId` changed to `targetId` and `targetId` changed to `sourceId` as shown below
CREATE VIEW `snap_rel_child_{termtype}` AS
    SELECT `r`.`sourceId` AS `id`, `d`.`term` AS `term`, `r`.`destinationId` AS `conceptId`
	FROM `snap_relationship` `r` JOIN `snap_{termtype}` `d` ON `r`.`sourceId` = `d`.`conceptId`
    WHERE `r`.`active` = 1  AND `r`.`typeId` = 116680003;


Example 4.8.3-1: Selecting Supertype Parents and Subtype Children

SQL Query
Select "Concept", conceptid, term from snap_pref where conceptId=6025007
UNION
Select "Supertype Parent", id, term from snap_rel_parent_pref where conceptId=6025007
UNION
Select "Subtype Child", id, term from snap_rel_child_pref where conceptId=6025007;
Result
Concept id term
Concept 6025007

Laparoscopic appendectomy

Supertype Parent 51316009

Laparoscopic procedure

Supertype Parent 80146002 Appendectomy
Supertype Parent 264274002

Endoscopic operation

Supertype Parent 440588003

Endoscopic procedure on appendix

Subtype Child 174041007

Laparoscopic emergency appendectomy

Subtype Child 307581005

Laparoscopic interval appendectomy

Subtype Child 708876004

Robot assisted laparoscopic appendectomy

Transitive Closure Views of Supertype Ancestors and Subtype Descendants

For each snapshot view the SNOMED CT example database includes two views that select the  supertype ancestors of a specified concept and two views that select the  subtype descendants of a specified concept. These views select the id and either the fully specified name or preferred synonym each ancestor or descendant concept. The characteristics of each of these views are shown in  Table 4.8.3-2 and a general template for the SQL definitions of these views is shown in  Template 4.8.3-2. To create each of the views named in the table, the placeholders for {termtype} need to be replaced with values in the Specific Settings column of the table. 

Example 4.8.3-2 demonstrates the use of these views to select the id and preferred term for a specified concept and all of its supertype ancestors and subtype descendants.

Table 4.8.3-2: Transitive Closure Views of Supertype Ancestors and Subtype Descendants

Name

3

.
Description Specific Settings
{myph}
snap_tc_ancestor_fsn
Selects the id and fully specified name of each supertype ancestor of a concept specified by conceptId. fsn
snap_tc_ancestor_pref
Selects the id and preferred synonym of each supertype ancestor of a concept specified by conceptId.

pref

snap_tc_descendant_fsn
Selects the id and fully specified name of each subtype descendant of a concept specified by conceptId. fsn
snap_tc_descendant_pref
Selects the id and preferred synonym of each subtype descendant of a concept specified by conceptId.

pref

Template 4.8.3-2: SQL Templates for Composite Views of Supertype Ancestors and Subtype Descendants

-- Supertype Ancestor View: Differences are `sourceId` changed to `targetId` and `targetId` changed to `sourceId` as shown below
CREATE VIEW `snap_tc_ancestor_{termtype}` AS
(SELECT `r`.`supertypeId` `id`,`d`.`term` `term`,`r`.`subtypeId` `conceptId`
    FROM  `snap_transclose` `r`
	JOIN `snap_{termtype}` `d` ON (`r`.`supertypeId` = `d`.`conceptId`));


--- Subtype Descendant View
CREATE VIEW `snap_tc_descendant_{termtype}` AS
(SELECT `r`.`subtypeId` `id`,`d`.`term` `term`,`r`.`supertypeId` `conceptId`
    FROM  `snap_transclose` `r`
    JOIN `snap_{termtype}` `d` ON (`r`.`subtypeId` = `d`.`conceptId`));

Example 4.8.3-2: Selecting Supertype Ancestors and Subtype Descendants

SQL Query
Select "Concept", conceptid, term from snap_pref where conceptId=6025007
UNION
Select "Ancestor", id, term from snap_tc_ancestor_pref where conceptId=6025007
UNION
Select "Descendant", id, term from snap_tc_descendant_pref where conceptId=6025007;
Result
Concept conceptId term
Concept 16001004 Otalgia
Ancestor 22253000 Pain
Ancestor 102957003 Neurological finding
Ancestor 106147001 Sensory nervous system finding
Ancestor 118234003 Finding by site
Ancestor 118236001 Ear and auditory finding
Ancestor 118254002 Finding of head and neck region
Ancestor 138875005 SNOMED CT Concept
Ancestor 247234006 Ear finding
Ancestor 276435006 Pain / sensation finding
Ancestor 279001004 Pain finding at anatomical site
Ancestor 297268004 Ear, nose and throat finding
Ancestor 301354004 Pain of ear structure
Ancestor 301857004 Finding of body region
Ancestor 404684003 Clinical finding
Ancestor 406122000 Head finding
Ancestor 699697007 Finding of sensation by site
Descendant 12336008 Referred otalgia
Descendant 74123003 Otogenic otalgia
Descendant 162356005 Earache symptoms
Descendant 162359003 Bilateral earache
Descendant 430879002 Posterior auricular pain
Descendant 1084561000119106 Bilateral referred otalgia of ears
Descendant 1089561000119107 Referred otalgia of left ear
Descendant 1092171000119100 Referred otalgia of right ear

Proximal Primitive Parent Views

For each snapshot view the SNOMED CT example database includes two views that select the  proximal primitive parents of a specified concept and two views that select the  subtype children of a specified concept. These views select the id and either the fully specified name or preferred synonym each parent or child concept. The characteristics of each of these views are shown in  Table 4.8.3-1 and a general template for the SQL definitions of these views is shown in  Template 4.8.3-1. To create each of the views named in the table, the placeholders for {termtype} need to be replaced with values in the Specific Settings column of the table. 

Example 4.8.3-1 and <span style="color:red;">Error: Referenced caption id not found!</span><div class="macroHelp"><b>Captions on current page:</b><br/> - Example: with ID: <b>parent-child-view</b> <br/> - Example: with ID: <b>transitive-closure-view</b> <br/> - Example: with ID: <b>proximal-primitive-view</b> <br/> - Example: with ID: <b>proximal-primitive-view-2</b> <br/> - Table: with ID: <b>parent-child-view</b> <br/> - Template: with ID: <b>parent-child-view</b> <br/> - Table: with ID: <b>transitive-closure-view</b> <br/> - Template: with ID: <b>transitive-closure-view</b> <br/> - Table: with ID: <b>proximal-primitive-view</b> <br/> - Template: with ID: <b>proximal-primitive-view</b> <br/>  demonstrate the use of these views to select the id and preferred term for a specified concept and all of its supertype parents and subtype children.

For each snapshot view the SNOMED CT example database includes ... . The characteristics of each of these views are shown in  Table 4.8.3-3 and a general template for the SQL definitions of these views is shown in  Template 4.8.3-3. To create each of the views named in the table, the placeholders for {myph} need to be replaced with values in the Specific Settings column of the table. 

Example 4.8.3-3 demonstrates the use of these views to select the id and preferred term for a specified concept and its proximal primitive parentsExample 4.8.3-4 demonstrates the use of these views to select the id and preferred term for a specified concept and all the concepts that have this concept as a proximal primitive parent.

Table 4.8.3-3: Views of Proximal Primitive Supertype Ancestors and Concepts with a Specific Proximal Primitive Ancestor

Name

3

Description Specific Settings
{viewtype}

snap_pp_parent_fsn

Selects the id and fully specified name of each proximal primitive parent of a concept specified by conceptId. fsn

snap_pp_parent_pref

Selects the id and preferred synonym of each proximal primitive parent of a concept specified by conceptId. pref

snap_pp_child_fsn

Selects the id and fully specified name of each concept with a proximal primitive parent specified by conceptId.

fsn

snap_pp_child_pref

Selects the id and preferred synonymof each concept with a proximal primitive parent specified by conceptId.

pref

Template 4.8.3-3: SQL Templates for Proximal Primitive Supertype Views

-- Proximal primitive parents of a specified concept
CREATE VIEW `snap_pp_parent_{viewtype}` AS
(SELECT `r`.`supertypeId` `id`,`d`.`term` `term`,`r`.`subtypeId` `conceptId`
    FROM  `snap_proximal_primitives` `r`
    JOIN `snap_{viewtype}` `d` ON (`r`.`supertypeId` = `d`.`conceptId`));


-- Concepts with a specified proximal primitive parent concept
CREATE VIEW `snap_pp_child_{viewtype}` AS
(SELECT `r`.`subtypeId` `id`,`d`.`term` `term`,`r`.`supertypeId` `conceptId`
    FROM  `snap_proximal_primitives` `r`
    JOIN `snap_{viewtype}` `d` ON (`r`.`subtypeId` = `d`.`conceptId`));

Example 4.8.3-3: Selecting Proximal Primitive Parents of a Concept

SQL Query
--
Select "Concept", conceptid, term from snap_pref where conceptId=21522001
UNION
Select "Proximal Primitive Parent", id, term from snap_pp_parent_pref where conceptId=21522001;
Result
Concept conceptId term
Concept 21522001 Abdominal pain
Proximal Primitive Parent 22253000 Pain

Example 4.8.3-4: Selecting Concepts with a Specified Proximal Primitive Parent


Select "Concept", conceptid, term from snap_pref where conceptId=22253000
UNION
Select "Concept with PP-Parent: 21522001|Pain|", id, term from snap_pp_child_pref where conceptId=22253000;
Result
Concept conceptId term
Concept 22253000 Pain
Concept with PP-Parent: 21522001 |Pain| 4448006 Allergic headache
Concept with PP-Parent: 21522001 |Pain| 4568003 Retrosternal pain
Concept with PP-Parent: 21522001 |Pain| 6561007 Pain in urethra
Concept with PP-Parent: 21522001 |Pain| 10601006 Pain in lower limb
Concept with PP-Parent: 21522001 |Pain| 12584003 Bone pain
Concept with PP-Parent: 21522001 |Pain| 15803009 Bladder pain
Concept with PP-Parent: 21522001 |Pain| 16513000 Postcordotomy pain
Concept with PP-Parent: 21522001 |Pain| 18876004 Pain in finger
Concept with PP-Parent: 21522001 |Pain| 20793008 Scapulalgia
Concept with PP-Parent: 21522001 |Pain| 21522001 Abdominal pain
Concept with PP-Parent: 21522001 |Pain| 21545007 Tenalgia
Concept with PP-Parent: 21522001 |Pain| 29857009 Chest pain
Concept with PP-Parent: 21522001 |Pain| 30473006 Pain in pelvis
Concept with PP-Parent: 21522001 |Pain| 30989003 Knee pain
... total of 240 rows returned ...

.


Footnotes
Ref Notes
1

The terms are displayed by using the Composite Description Views described in the previous section.

2

The prefix snap is replaced by snap1 or snap2 for retrospective views.

3

Transitive closure and proximal primitive views are only available for the current snapshot.

[ a b ]


Feedback
  • No labels