SNOMED International Mapping Tool

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Overview

This page documents the use of reporting tools.

Prerequisites

  • MySQL database must already exist (e.g. "mappingservicedb") and be loaded with data.
  • MySQL database connection parameters must be defined in the properties file specified by "run.config".
  • Report definitions defined for the specified project.

Details 

These tools are used to generate and remove reports. The report generator can be wired to an automation (continuous integration server or cron job) to run daily and generate reports.  The remover tool can be used to remove reports, if desired.

 

Following are some details about these tools:

Mojo: ReportGenerateDailyMojo.java (in admin/mojo/src/main/resources/java/org/ihtsdo/otf/mapping/mojo)

Project: admin/loader

Configuration Parameters

  • A profile of "GenerateDailyReports" must be passed
  • run.config - the standard configuration file specified as a -D parameter

  • refset.id - the map project refset id to generate reports for, specified as a -D parameter.

  • start.date - the start date range for reporting specified as a -Dparameter in the string format "yyyyMMdd"
  • end.date - the end date range for reporting specified as a -Dparameter in the string format "yyyyMMdd"
    • typically, this is left null and reports are generated from the start date until now.
    • This parameter is supported for the generation of report data in the past.


Mojo: ReportRemoverMojo.java (in admin/mojo/src/main/resources/java/org/ihtsdo/otf/mapping/mojo)

Project: admin/remove

Configuration Parameters

  • A profile of "Reports" must be passed
  • run.config - the standard configuration file specified as a -D parameter

  • refset.id - the map project refset id to remove reports for, specified as a -D parameter.

    • This tool is rarely used outside the development environment.

Samples

Sample command line call to generate for refset id 447563008 for a date:

% cd mapping-parent/admin/loader
% set date = `/bin/date +%Y%m%d` 
% mvn -Drun.config=~/config/config.properties -PGenerateDailyReports -Drefset.id=447563008 -Dstart.date=$date install

 

Sample command line call to clear reports for refset id 447563008:

 

% cd mapping-parent/admin/remover
% mvn -Drun.config=~/config/config.properties -PReports Drefset.id=447563008 install

 

Sample Eclipse run configuration to generate for refset id 447563008 for a date:

Sample Eclipse run configuration to clear reports for refset id 447563008:

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