| Page properties |
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| Status | In progressReady for implementation |
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| Version | 1.0.1 |
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Descriptions:
| Term | description type | Language/acceptability | Language/acceptability | Case significanceSignificance |
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| [Accidental/Intentional] Poisoning caused by [substance or product[agent] due to [event] (disorder) | FSN | us:P | gb:P | ci |
Poisoning caused by [substance or product[Accidental/Intentional] Poisoning caused by [agent] due to [event]
| SYN | us:P | gb:P | ci |
| [substance or product] poisoningAccidental/Intentional] [Agent] poisoning due to [event] | SYN | us:A | gb:A | ci |
Concept model:
| Attribute cardinality | Attribute cardinality in role group | Attribute | Value |
|---|
| 1..1 | 0..0 |
| Scg expression |
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116680003 |Is a (attribute)| |
|
| Scg expression |
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75478009 |Poisoning (disorder)| |
|
| 0..1 | 0..1 |
| Scg expression |
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263502005 |Clinical course (attribute)| |
|
| Scg expression |
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< 288524001 |Courses (qualifier value)| |
|
| 0..1 | 0..1 |
| Scg expression |
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42752001 |Due to (attribute)| |
| | << | 1148742001 | Intentional event (event)| OR << 418019003 |Accidental event |
| 0.. | *2 | 01..1 |
| Scg expression |
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246075003|Causative agent (attribute)| |
|
| Scg expression |
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[agent] << 105590001|Substance (substance)| OR << 373873005|Pharmaceutical / biologic product (product)| OR << 410607006 |Organism (organism)| |
|
| 0..1 |
| Scg expression |
|---|
363698007 |Finding site (attribute)| |
| | <<< 123037004 |Body structure (body structure)| |
|
| 0..1 |
| Scg expression |
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370135005 |Pathological process (attribute)| |
|
| Scg expression |
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< 308489006 |Pathological process (qualifier value)| |
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| 0..1 |
| Scg expression |
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116676008 |Associated morphology (attribute)| |
| | << | 37782003 | DamageMorphologically abnormal structure (morphologic abnormality)| |
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Definition status:
| Scg expression |
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900000000000073002|Defined (core metadata concept)| |
Applies to
Poisoning caused by substance or , product, excluding concepts of types: "Poisoning caused by organism", "Food poisoning","or organism excluding "Overdose", and "Intoxication" (which will have their own templates):
| Scg expression |
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(((<< 789500875478009 |Poisoning caused by drug AND/OR medicinal substance (disorder)|) : [0..0] 42752001 |Due to (attribute)| = 781249001 |Consumption of contaminated food (event)| AND [0..0] 42752001 |Due to (attribute)| = << 418715001 |Exposure to potentially harmful entity (event)| AND [0..0] 246075003 |Causative agentMINUS (<< 1149322001 |Intoxication (disorder)| OR << 1149222004 |Overdose (disorder)| ) |
Template Language
| Scg expression |
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75478009 |Poisoning (disorder)|:
[[~0..1]] {[[~0..1]] 263502005 |Clinical course (attribute)| = <<[[ 410607006+id |Organism (organism)| )< OR (( << 441952005 |Poisoning caused by chemical substance (disorder288524001 |Courses (qualifier value)| ) : [0..0 @course]]},
[[~0..1]] {[[~0..1]] 42752001 |Due to (attribute)| = 781249001 |Consumption of contaminated food (event)| AND [0..0] 42752001 |Due to (attribute)| = << 418715001 |Exposure to potentially harmful entity (event)| AND [0..0[[ +id ( < 272379006 |Event (event)| ) @dueto ]]},
[[~0..2 @rolegroup]] {
[[~1..1]] 246075003 |Causative agent (attribute)| = [[+id (( << 410607006105590001 |OrganismSubstance (organismsubstance)| ))OR MINUS (<< 1149322001373873005 |IntoxicationPharmaceutical / biologic product (disorderproduct)|) OR << 1149222004410607006 |OverdoseOrganism (disorderorganism)|) |
Template Language
| Scg expression |
|---|
75478009 |Poisoning (disorder)|:
[[~0..1 @causative]], {
[[~0..1]] 263502005363698007 |ClinicalFinding coursesite (attribute)| = [[ +id ( <<< 288524001123037004 |CoursesBody structure (qualifierbody valuestructure)| ) @course]]},
[[~0..1]] {[[~0..1]] 42752001 |Due to370135005 |Pathological process (attribute)| = [[+id ( << 1148742001308489006 |IntentionalPathological eventprocess (eventqualifier value)| OR << 418019003 |Accidental event (event)|) @dueto ]]},
[[~0..*]] {[[~0..1]] 246075003116676008 |CausativeAssociated agentmorphology (attribute)| = [[+id ( <<< 10559000149755003 |SubstanceMorphologically abnormal structure (substancemorphologic abnormality)| OR < 373873005 |Pharmaceutical / biologic product (product)|) @causative]]}) ]]} |
Note:
- Pathological process is added to include content under food poisoning.
- Addition of other attributes such as "246454002 |Occurrence (attribute)|, 363714003 |Interprets (attribute)|, and 363713009 |Has interpretation (attribute)| was considered. However, they were not added due to the very low number of concepts defined by them. Same consideration was applied to expanding the range for 42752001 |Due to (attribute)| to include 71388002 |Procedure (procedure)|,
and/or 64572001 |Disease (disorder)| i.e. they were not added as valid values for due to attribute because only a very small number of concepts are defined by them.
Link to the misaligned concept report
https://docs.google.com/spreadsheets/u/0/d/1G-cOv78CFHDprzBYWvb8b2WRCu-PsNxp-0vlzG716nQ/edit
Rules for generating descriptions:
- Apply General rules for generating descriptions for templates
- Remove the word 'event' and semantic tag from the value of |Due to|
Jira tickets
| Jira |
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| server | IHTSDO JIRA |
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| serverId | b202d822-d767-33be-b234-fec5accd5d8c |
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| key | INFRA-12455 |
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EDITORIAL GUIDELINES for Causative agent (attribute):
Hierarchy | Concept type | Allowed | Exception | Examples and Notes |
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| Substance | Base | yes | none | Poisoning concepts representing a substance base should be modeled using a Causative agent that is a descendant of 105590001 |Substance (substance)|. Examples to be added: - 13503000 |Poisoning caused by naloxone (disorder)|
- 30138004 |Poisoning caused by ether (disorder)|
Classification results are expected to be consistent with the modeling of the concept selected as the Causative agent in the Substance hierarchy. |
| Substance | Modification | no | yesException and examples to be added | Poisoning concepts representing a substance modification should be modeled using a Causative agent that is a descendant of 105590001 |Substance (substance)|. Concepts representing substance modifications are exceptions and may be included if the poisoning profile is significantly different from the substance base. Exception examples: - Salt forms (e.g. 273948005 |Chloral hydrate (substance)|, 396063006 |Fluphenazine decanoate (substance)|)
Examples: - 62942003 |Tetraethyl pyrophosphate poisoning (disorder)|
|
| Substance | Structure grouper | yes | none | Poisoning concepts representing a structure grouper should be modeled using a Causative agent that is a descendant of 105590001 |Substance (substance)|. Examples: - 1153528004 |Poisoning caused by substance with ether structure (disorder)|
Classification results are expected to be consistent with the modeling of the concept selected as the Causative agent in the Substance hierarchy. |
| Substance | Disposition grouper | yes | none | Poisoning concepts representing a disposition grouper should be modeled using a Causative agent that is a descendant of 105590001 |Substance (substance)|. Examples: - 9291000 |Poisoning caused by monoamine oxidase inhibitor (disorder)|
Classification results are expected to be addedreflect that the adverse reaction concepts are descendants of the appropriate disposition grouper based on the modeling of the 726542003 |Has disposition (attribute)| attribute in the substance hierarchy. |
| Substance | Role grouper | no | none | Poisoning concepts representing a Role grouper should be modeled using a Causative agent that is a descendant of 105590001 |Substance (substance)|. Example: - 241748001 |Poisoning caused by analgesic drug (disorder)|
Classification results are expected to reflect that the adverse reaction concepts are descendants of the appropriate disposition grouper based on the modeling of the 726542003 |Has disposition (attribute)| attribute in the substance hierarchy. |
| Product | Structure | Product | Disposition grouper | no | none | No use case has been identified for use of this concept type for modeling in this subhierarchy. Medicinal product-containing concepts can be used for modeling in this subhierarchy. |
| Substance | Role grouper | no | none | Substance role groupers to be replaced by product role groupers |
| Product | Role grouper | yes | none | Examples to be added - pending |
| Substance | Structure grouper | yes | none | Examples to be added |
|
| Product | Disposition | Product | Structure grouper | no | none | No use case has been identified for use of this concept type for modeling in this subhierarchy. Medicinal product-containing concepts can be used for modeling in this subhierarchy. |
| Product | Role grouper | yes | none | Examples to be added - pending implementation of roles and products as causative agents |
| Product | Medicinal product-containing | yes | none | examples Examples to be added - pendingpending implementation of roles and products as causative agents |
| Product | Medicinal product-only | no | none | No use case has been identified for use of this concept type for modeling in this subhierarchy. Medicinal product-containing concepts can be used for modeling in this subhierarchy.
|
| Product | Medicinal product form-containing | no | none | No use case has been identified for use of this concept type for modeling in this subhierarchy. Medicinal product form-containing concepts can be used for modeling in this subhierarchy. |
| Product | Medicinal product form-only | no | none | No use case has been identified for use of this concept type for modeling in this subhierarchy. Medicinal product form-containing concepts can be used for modeling in this subhierarchy. |
| Product | Clinical drug | no | none | No use case has been identified for use of this concept type for modeling in this subhierarchy. Medicinal product form-containing concepts can be used for modeling in this subhierarchy. |
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