Organism & Infectious Disease Model Project

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Date

June 26, 2018 (20:00 UTC)

GoToMeeting Details

Join from PC, Mac, Linux, iOS or Android: https://zoom.us/j/5892670788

Attendees

Apologies

Objectives

  • To discuss progress related to the first "Deliverable" posted on this Project Site.  See Item 1.

Discussion items

ItemDescriptionOwnerNotesAction
1Upper Hierarchy Project

Jeff Wilcke

  • Jeff Wilcke is currently drafting a combined Inception / Elaboration document based on OIDM's first "deliverable." Intent is to have a final draft available for review by the August OIDM meeting and send it for review / approval soon thereafter.
2 Laboratory procedures

 Jeff Wilcke

  • 264395009 | Microorganism (organism) is a "destination" value for 59 procedures (attribute = 246093002 | Component). I would like help reviewing these procedures. Two things about which I'd like your opinion:
  1. Do these procedure concept classes represent "real" laboratory tests? (Alternative - they serve as grouping or navigational concepts for organizing procedure classes that are real)
  2. Would there be any significant effects of substituting 410607006 | Organism (organism) for the current destination value assigned to the relationship "Component" ?
  •   Give the group time to consider and discuss opinions in August.
3Descriptive organism concepts

Jeff Wilcke

  • There are a number of concept classes present in the first few generations of the organism hierarchy that Jeff Wilcke believes are of little practical value. These include:
  1. 115630000 | Renotrophic organism - (and its 2 descendants)
  2. 284666000 | Trophic life form - (and its 422 descendants, 407 of which are also properly classified as Trematodes, 15 have no descendants that are extant organisms)
  3. Antimicrobial resistant organism - (all its organism descendants are bacteria)
  4. Antimicrobial susceptible organism (its 2 organism descendants are bacteria)

1 & 2 would seem to have little clinical or epidemiologic value.

Certain subtypes of 3 & 4 would seem to have clinical or epidemiologic value. Can 3 & 4 be related to actual laboratory results (through SNOMED logical models or other)?

  •  Give the group time to consider and discuss opinions in August.


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