Page History

...

• javax.persistence.jdbc.url (contains the databse database name)
• javax.persistence.jdbc.user
• javax.persistence.jdbc.password
• hibernate.search.default.indexBase  ( recommend choosing something in your data dir, e.g. c:/refset/data/indexes or ~/refset/indexes)
• mail.smtp.* (list for automated system emails)
• identifier.assignment.handler, e.g..
  • If you have a Snomed-provided IMS account, you can put your name and password below to access the Snomed identifier service:

    • identifier.assignment.handler.DEFAULT.url=http://dev-cis.ihtsdotools.org:3000/api
      identifier.assignment.handler.DEFAULT.userName=EDIT_THIS
      identifier.assignment.handler.DEFAULT.password=EDIT_THIS

  • If you do NOT have a Snomed-provided IMS account, you can use the provided simple identifier handler:
    • identifier.assignment.handler=DEFAULT
      identifier.assignment.handler.DEFAULT.class=org.ihtsdo.otf.refset.jpa.services.handlers.DummyComponentIdentifierServiceHandler
      #identifier.assignment.handler.DEFAULT.class=org.ihtsdo.otf.refset.jpa.services.handlers.IhtsdoComponentIdentifierServiceHandler
      #identifier.assignment.handler.DEFAULT.url=https://cis.ihtsdotools.org/api
      #identifier.assignment.handler.DEFAULT.userName=EDIT_THIS
      #identifier.assignment.handler.DEFAULT.password=EDIT_THIS
• terminology.handler, e.g.

  • terminology.handler=BROWSER,SNOWOWL,SNOWOWL-SE
    terminology.handler.BROWSER.class=org.ihtsdo.otf.refset.jpa.services.handlers.BrowserTerminologyHandler
    terminology.handler.BROWSER.defaultUrl=https://sct-rest.ihtsdotools.org/api
    terminology.handler.BROWSER.apiKey=EDIT_THIS
    terminology.handler.SNOWOWL.class=org.ihtsdo.otf.refset.jpa.services.handlers.SnowowlTerminologyHandler
    terminology.handler.SNOWOWL.defaultUrl=https://authoring.ihtsdotools.org/snowowl/snomed-ct/v2
    terminology.handler.SNOWOWL.authHeader=Basic EDIT_THIS
    terminology.handler.SNOWOWL.apiKey=EDIT_THIS
    terminology.handler.SNOWOWL-SE.class=org.ihtsdo.otf.refset.jpa.services.handlers.SnowowlTerminologyHandler
    terminology.handler.SNOWOWL-SE.defaultUrl=https://se-authoring.ihtsdotools.org/snowowl/snomed-ct/v2
    terminology.handler.SNOWOWL-SE.apiKey=EDIT_THIS

• base.url=EDIT_THIS (e.g. http://localhost:8080/refset-rest)

• logout.url=EDIT_THIS (e.g. http://localhost:8080/refset-rest/index.html)

Step 6 - Create database

Create a MySQL UTF8 database. e.g.

...

# from top-level code directory
cd admin
mvn install -PSample -Drefset.config=/home/ihtsdo/config/config.properties -Dmode=create >&! mvn.log

Following is a sample Eclipse run configuration for the same thing.

Image RemovedImage Added

Step 8 - Deploy application, Launch Server

...